Set hyperparamters used in the model

Set hyperparamters used in the model

HyperParameters(
  object.list,
  d = 35,
  eta = NULL,
  mu_mu = NULL,
  Sigma_mu = NULL,
  nu_omega = NULL,
  n_Lambda = NULL,
  Sigma_Lambda = NULL,
  nu_tau = NULL,
  lambda0 = NULL,
  lambda1 = NULL,
  alpha_p = NULL,
  beta_p = NULL
)

Arguments

object.list

list of seurat object

d

dimension of latent factor.

eta

smoothing parameters in Potts model.

mu_mu

mean vector of gaussian distribution (mu).

Sigma_mu

shared covariance matrix of gaussian distribution (mu).

nu_omega

shape and rate parameters of gamma distribution (omega).

n_Lambda

degree of freedom of wishart distribution (Lambda).

Sigma_Lambda

pds location matrix (Lambda).

nu_tau

shape and rate parameters of gamma distribution (tau).

lambda0

variance of gaussian distribution (L).

lambda1

variance of gaussian distribution (L).

alpha_p

shape1 parameter of beta distribution (p).

beta_p

shape2 parameter of beta distribution (p).

Value

result: a list of hyperparameters